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        <title>Daiphys Tech Portal - statistics:tools</title>
        <description></description>
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       <dc:date>2026-05-01T17:53:56+00:00</dc:date>
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        <title>Daiphys Tech Portal</title>
        <link>https://www.daiphys.com/portal/</link>
        <url>https://www.daiphys.com/portal/_media/wiki/dokuwiki.svg</url>
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        <dc:date>2023-04-07T00:52:15+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>Tools</title>
        <link>https://www.daiphys.com/portal/statistics/tools/index.html?rev=1680828735&amp;do=diff</link>
        <description>Tools


	* Lifelines
	* R
	* SAS
	* Stata
	* Statsmodels</description>
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        <dc:date>2023-04-07T00:52:53+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>Lifelines</title>
        <link>https://www.daiphys.com/portal/statistics/tools/lifelines.html?rev=1680828773&amp;do=diff</link>
        <description>Lifelines

Sample
import lifelines
data = pd.read_csv(&#039;sample.csv&#039;)
duration = &#039;DUR&#039;
event = &#039;EVT&#039;
formula = &#039;EXP1 + EXP2 + EXP3&#039;
model = lifelines.CoxPHFitter(baseline_estimation_method=&#039;breslow&#039;)
model.fit(data, duration_col=duration, event_col=event, formula=formula, fit_options={&#039;step_size&#039;:0.001}, show_progress=True)
model.print_summary(decimals=5)</description>
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        <dc:date>2023-04-07T00:53:35+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>R</title>
        <link>https://www.daiphys.com/portal/statistics/tools/r.html?rev=1680828815&amp;do=diff</link>
        <description>R

Sample
list.files()
setwd(&#039;project&#039;)
library(survival)
df &lt;- read.csv(&#039;sample.csv&#039;, header=TRUE)
data &lt;- df[, c(1, 2, 3, 4, 5)]
model &lt;- glm(data$OBJ ~ ., data=data, family=binomial(link=&#039;logit&#039;))
model &lt;- coxph(Surv(data$DUR, data$EVT) ~ ., data=data, method=&#039;breslow&#039;)
summary &lt;- summary(model)
coef &lt;- summary$coefficient</description>
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        <dc:date>2023-04-07T00:55:19+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>SAS</title>
        <link>https://www.daiphys.com/portal/statistics/tools/sas.html?rev=1680828919&amp;do=diff</link>
        <description>SAS

References

SAS

&lt;https://www.sas.com/&gt;</description>
    </item>
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        <dc:date>2023-04-07T00:56:33+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>Stata</title>
        <link>https://www.daiphys.com/portal/statistics/tools/stata.html?rev=1680828993&amp;do=diff</link>
        <description>Stata

References

Stata

&lt;https://www.stata.com/&gt;</description>
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        <dc:date>2023-04-07T00:57:07+00:00</dc:date>
        <dc:creator>Anonymous (anonymous@undisclosed.example.com)</dc:creator>
        <title>Statsmodels</title>
        <link>https://www.daiphys.com/portal/statistics/tools/statsmodels.html?rev=1680829027&amp;do=diff</link>
        <description>Statsmodels

Sample
import statsmodels.api as sm
import statsmodels.formula.api as smf
sm.show_versions()
data = pd.read_csv(&#039;sample.csv&#039;)
formula = &#039;OBJ ~ EXP1 + EXP2 + EXP3&#039;
model = smf.glm(formula=formula, data=data, family=sm.families.Binomial()).fit()
print(model.summary())
print(model.conf_int(alpha=0.05))</description>
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